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v1.0
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Democratizing access to pediatric genomics data
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v1.0
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Tutorials
Build a workflow tutorial
Upload a custom Python program using a Dockerfile
Create a tar archive
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Access CAVATICA
Access via the visual interface
Access via the API
Set up two-factor authentication
CAVATICA Projects
Projects overview
Manage the project dashboard
Controlled projects
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MANAGE FILES
Overview
File repositories on CAVATICA
Copy files using the visual interface
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Bring data to CAVATICA
Upload your data to CAVATICA
Upload from your computer
Upload via the command line
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Find apps
Apps on CAVATICA
Workflows and tools
Interactive Web Apps
Set metadata associated with a file
Metadata on CAVATICA
System metadata
Metadata schema
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Collaborate securely
Collaboration on CAVATICA
Add a collaborator to a project
Set permissions
Bring your tools
About the SDK
About the Common Workflow Language
CWL v1.0 improvements over sbg:draft-2
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Docker
About Docker
Install Docker
The image registry
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Developer tools
Get your authentication token
Publish your app in the Public Apps gallery
Edit an app
About the editor
About the tool editor
Introduction to tool wrapping
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Tool wrapping tips and tricks
Javascript Cookbook
Set suggested input values for CWL v1.x apps
Describe your tool (Legacy)
The tool editor
Create a workflow
Edit a workflow
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Public projects
Bulk RNA-Seq Transcription Profiling of HSV-1 Infected Cells
Meta-Analysis Of Cytometry Data From ImmPort Data Repository
Browse public datasets
Introduction to datasets
TCGA data
TCGA data access
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Run an analysis
About analyses
About batch analyses
Run a task
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SB COMMAND LINE INTERFACE
Seven Bridges Command Line Interface
Seven Bridges Command Line Interface Reference
Task Execution
About task execution
About Spot/Preemptible Instances
Use Spot/Preemptible Instances
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Review a task
Review the task page
View task stats
View task logs
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Interactive Browsers
Genome Browser
Kids First studies
Kids First studies overview and access
CAVATICA Datasets
CAVATICA datasets overview
Access to CAVATICA datasets
Connect cloud storage
Volumes
Aliases
Amazon Web Services Simple Storage Service (S3) volumes
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SBFS (Beta)
About SBFS
Install SBFS automatically
Install SBFS manually
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Data Studio
About Data Studio
JupyterLab quick reference
RStudio quick reference
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Analysis results
Download results
View output files
SBFS (Beta)
About SBFS
Install SBFS manually
Install SBFS automatically
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SBFS Command reference
Overview
Configure
List
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