Start a bulk import job

This call lets you perform a bulk import of files from your volume (either Amazon Web Services or Google Cloud Storage) into your project on the CAVATICA. One call can contain up to 100 items.

If successful, an alias will be created on the CAVATICA. Aliases appear as files on the CAVATICA and can be copied, executed, and modified as such. They refer back to the respective file on the given volume.

Learn more about using the Volumes API for Amazon S3 and for Google Cloud Storage.

Request

https://cavatica-api.sbgenomics.com/v2/bulk/storage/imports/create

Example request

POST v2/bulk/storage/imports/create
Host: cavatica-api.sbgenomics.com
X-SBG-Auth-Token: 3259c50e1ac5426ea8f1373259740f75

curl -X POST \
  https://cavatica-api.sbgenomics.com/v2/bulk/storage/imports/create \
  -H 'Content-Type: application/json' \
  -H 'X-SBG-Auth-Token: b04aa2a2e98348a1a3a75ca677ea7fd7' \
  -d '{
    "items": [
        {
              "source": {
                "volume": "rfranklin/input",
                "location": "example_human_Illumina.pe_1.fastq"
              },
              "destination": {
                "project": "rfranklin/my_project",
                "name": "example_human_Illumina.pe_1.fastq"
              },
              "overwrite": true
        },{
              "source": {
                "volume": "rfranklin/input",
                "location": "example_human_Illumina.pe_2.fastq"
              },
              "destination": {
                "project": "rfranklin/my_project",
                "name": "example_human_Illumina.pe_2.fastq"
              },
              "overwrite": true
        }
    ]
}
'

Header Fields

Name	Description
X-SBG-Auth-Token required	Your CAVATICA authentication token.
Content-Type required	`application/json`

Request body

For every item in the request body, you should enter the list of key-value pairs described in the table below. One API call can contain up to 100 items.

Key	Data type	Description
`source` required	object	This object should describe the source from which the file should be imported.
`volume` required	string	Volume ID from which to import the file.
`location` required	string	Volume-specific location pointing to the file to import. This location should be recognizable to the underlying cloud service as a valid key or path to the file. Please note that if this volume was configured with a prefix parameter when it was created, the `prefix` will be prepended to location before attempting to locate the file on the volume.
`destination` required	object	This object should describe the CAVATICA destination for the imported file.
`project` required	string	The project in which to create the alias.
`name`	string	The name of the alias to create. This name should be unique to the project. If the name is already in use in the project, you should use the `overwrite` parameter in this call to force any file with that name to be deleted before the alias is created. If name is omitted, the alias name will default to the last segment of the complete location (including the `prefix`) on the volume. Segments are considered to be separated with forward slashes ('/').

Example request body

{
    "items": [
        {
              "source": {
                "volume": "rfranklin/input",
                "location": "example_human_Illumina.pe_1.fastq"
              },
              "destination": {
                "project": "rfranklin/my_project",
                "name": "example_human_Illumina.pe_1.fastq"
              },
              "overwrite": true
        },{
              "source": {
                "volume": "rfranklin/input",
                "location": "example_human_Illumina.pe_2.fastq"
              },
              "destination": {
                "project": "rfranklin/my_project",
                "name": "example_human_Illumina.pe_2.fastq"
              },
              "overwrite": true
        }
    ]
}

Response

See a list of CAVATICA-specific response codes that may be contained in the body of the response.

Response body

Key	Data type	Description
`id`	string	ID of this import job.
`state`	string	The state of this import job. Possible values are: `PENDING`: the import is queued; `RUNNING`: the import is running; `COMPLETED`: the import has completed successfully; `FAILED`: the import has failed.
`source`	object	Import source, as passed when this job was started by the call to start an import job.
`destination`	object	Import destination, as passed when this job was start an import job.
`result`	object	File object that was imported.
`error`	object	In case of error in the import job, standard API error is returned here.

Example response body

{
    "items": [
        {
            "resource": {
                "href": "https://cavatica-api.sbgenomics.com/v2/storage/imports/wMtBbkNxJ7ldKtkZ3hC3eisVr3DtQcT3",
                "id": "wMtBbkNxJ7ldKtkZ3hC3eisVr3DtQcT3",
                "state": "PENDING",
                "overwrite": true,
                "source": {
                    "volume": "rfranklin/input",
                    "location": "example_human_Illumina.pe_1.fastq"
                },
                "destination": {
                    "project": "rfranklin/my_project",
                    "name": "example_human_Illumina.pe_1.fastq"
                }
            }
        },
        {
            "resource": {
                "href": "https://cavatica-api.sbgenomics.com/v2/storage/imports/0vXu4HQe7WqdTZg9iRcetk0UePQZ2I9I",
                "id": "0vXu4HQe7WqdTZg9iRcetk0UePQZ2I9I",
                "state": "PENDING",
                "overwrite": true,
                "source": {
                    "volume": "rfranklin/input",
                    "location": "example_human_Illumina.pe_2.fastq"
                },
                "destination": {
                    "project": "rfranklin/my_project",
                    "name": "example_human_Illumina.pe_2.fastq"
                }
            }
        }
    ]
}