Get task inputs

/tasks/{task_id}/inputs

For general information on the API, including formatting, parameters, and pagination, please see the API Overview.

This call returns just the inputs provided to the specified task. The task is referred to by its ID, which you can obtain by making the call to list all tasks you can access.

https://cavatica-api.sbgenomics.com/v2/tasks/{task_id}/inputs

Request

Example request

GET /v2/tasks/f0b89de2-45b6-789c-12b3-05b832c576c6/inputs HTTP/1.1
Host: cavatica-api.sbgenomics.com
X-SBG-Auth-Token: 3259c50e1ac5426ea8f1273259740f74
curl  -s -H "X-SBG-Auth-Token: 6282d5e2121d43e7900e9d52b15845e7" -H "content-type: application/json" -X GET "https://cavatica-api.sbgenomics.com/v2/tasks/f0b89de2-45b6-789c-12b3-05b832c576c6/inputs"

Header Fields

NameDescription
X-SBG-Auth-Token
required
Your CAVATICA authentication token.

Path parameters

NameDescription
task_id
required
The ID of the task you are querying

Query parameters

NameData typeDescription
fieldsstringSelector specifying a subset of fields to include in the response.

Response

See a list of CAVATICA-specific response codes that may be contained in the body of the response.

Example response body

{
    "Known_SNPs": [
        {
            "class": "File",
            "path": "566b059ae4b0c560b469eb7c",
            "name": "dbsnp_137.b37.vcf"
        }
    ],
    "Known_Indels": [
        {
            "class": "File",
            "path": "567890abc9b0307bc0414164",
            "name": "1000G_phase1.indels.b37.vcf"
        },
        {
            "class": "File",
            "path": "567890abc1e5339df0414123",
            "name": "Mills_and_1000G_gold_standard.indels.b37.sites.vcf"
        }
    ],
    "input_file": {
        "class": "File",
        "path": "567890abc4f3066bc3750174",
        "name": "3d1b628fa0d554d5fefb71444511dcbb.bam"
    },
    "Target_BED": {
        "class": "File",
        "path": "567890abc8a5639cc6722063",
        "name": "exome_targets.b37.bed"
    },
    "Reference": {
        "class": "File",
        "path": "567890abc3d8130ea4047731",
        "name": "GRCh37-lite.fa"
    },
    "snpEff_databse": {
        "class": "File",
        "path": "567890abc8a5136ec6127063",
        "name": "snpEff_v3_3_GRCh37.71.zip"
    },
    "memory_per_job": 8000
}

Language
Click Try It! to start a request and see the response here!