{"metadata":{"image":[],"title":"","description":""},"api":{"url":"","auth":"required","settings":"","examples":{"codes":[]},"method":"get","params":[],"results":{"codes":[]}},"next":{"description":"","pages":[]},"title":"Get task inputs","type":"endpoint","slug":"get-task-inputs","excerpt":"/tasks/{task_id}/inputs\n\nFor general information on the API, including formatting, parameters, and pagination, please see the [API Overview](the-api).","body":"This call returns just the inputs provided to the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](doc:list-tasks-you-can-access).\n[block:code]\n{\n  \"codes\": [\n    {\n      \"code\": \"https://cavatica-api.sbgenomics.com/v2/tasks/{task_id}/inputs\",\n      \"language\": \"text\",\n      \"name\": \"API path\"\n    }\n  ]\n}\n[/block]\n##Request\n\n###Example request\n[block:code]\n{\n  \"codes\": [\n    {\n      \"code\": \"GET /v2/tasks/08c5ce64-1551-4b7d-b054-63a1517bc7bb/inputs HTTP/1.1\\nHost: cavatica-api.sbgenomics.com\\nX-SBG-Auth-Token: 3259c50e1ac5426ea8f1273259740f74\\n\",\n      \"language\": \"http\",\n      \"name\": null\n    },\n    {\n      \"code\": \"curl  -s -H \\\"X-SBG-Auth-Token: 6282d5e2121d43e7900e9d52b15845e7\\\" -H \\\"content-type: application/json\\\" -X GET \\\"https://cavatica-api.sbgenomics.com/v2/tasks/08c5ce64-1551-4b7d-b054-63a1517bc7bb/inputs\\\"\",\n      \"language\": \"curl\",\n      \"name\": \"cURL\"\n    }\n  ],\n  \"sidebar\": true\n}\n[/block]\n###Header Fields\n[block:parameters]\n{\n  \"data\": {\n    \"h-0\": \"Name\",\n    \"h-1\": \"Description\",\n    \"0-0\": \"`X-SBG-Auth-Token`\\n_required_\",\n    \"0-1\": \"Your Cavatica [authentication token](doc:get-your-authentication-token).\",\n    \"h-2\": \"\"\n  },\n  \"cols\": 2,\n  \"rows\": 1\n}\n[/block]\n###Path parameters\n[block:parameters]\n{\n  \"data\": {\n    \"0-0\": \"`task_id`\\n_required_\",\n    \"h-0\": \"Name\",\n    \"h-1\": \"Description\",\n    \"0-1\": \"The ID of the task you are querying\"\n  },\n  \"cols\": 2,\n  \"rows\": 1\n}\n[/block]\n###Query parameters\n[block:parameters]\n{\n  \"data\": {\n    \"h-0\": \"Name\",\n    \"h-1\": \"Data type\",\n    \"h-2\": \"Description\",\n    \"0-0\": \"`fields`\",\n    \"0-1\": \"string\",\n    \"0-2\": \"Selector specifying a subset of fields to include in the response.\"\n  },\n  \"cols\": 3,\n  \"rows\": 1\n}\n[/block]\n##Response\n\n[See a list of Cavatica-specific response codes that may be contained in the body of the response.](doc:api-status-codes) \n\n###Example response body\n[block:code]\n{\n  \"codes\": [\n    {\n      \"code\": \"{\\n    \\\"Known_SNPs\\\": [\\n        {\\n            \\\"class\\\": \\\"File\\\",\\n            \\\"path\\\": \\\"566b059ae4b0c560b469eb7c\\\",\\n            \\\"name\\\": \\\"dbsnp_137.b37.vcf\\\"\\n        }\\n    ],\\n    \\\"Known_Indels\\\": [\\n        {\\n            \\\"class\\\": \\\"File\\\",\\n            \\\"path\\\": \\\"566b059ae4b0c560b469eb81\\\",\\n            \\\"name\\\": \\\"1000G_phase1.indels.b37.vcf\\\"\\n        },\\n        {\\n            \\\"class\\\": \\\"File\\\",\\n            \\\"path\\\": \\\"566b059ae4b0c560b469eb86\\\",\\n            \\\"name\\\": \\\"Mills_and_1000G_gold_standard.indels.b37.sites.vcf\\\"\\n        }\\n    ],\\n    \\\"input_file\\\": {\\n        \\\"class\\\": \\\"File\\\",\\n        \\\"path\\\": \\\"56796c27e4b0c560b46ab03c\\\",\\n        \\\"name\\\": \\\"3d1b628fa0d554d5fefb71444511dcbb.bam\\\"\\n    },\\n    \\\"Target_BED\\\": {\\n        \\\"class\\\": \\\"File\\\",\\n        \\\"path\\\": \\\"566b059ae4b0c560b469eb7f\\\",\\n        \\\"name\\\": \\\"exome_targets.b37.bed\\\"\\n    },\\n    \\\"Reference\\\": {\\n        \\\"class\\\": \\\"File\\\",\\n        \\\"path\\\": \\\"56796f07e4b0c560b46ab043\\\",\\n        \\\"name\\\": \\\"GRCh37-lite.fa\\\"\\n    },\\n    \\\"snpEff_databse\\\": {\\n        \\\"class\\\": \\\"File\\\",\\n        \\\"path\\\": \\\"566b059ae4b0c560b469eb83\\\",\\n        \\\"name\\\": \\\"snpEff_v3_3_GRCh37.71.zip\\\"\\n    },\\n    \\\"memory_per_job\\\": 8000\\n}\",\n      \"language\": \"json\"\n    }\n  ],\n  \"sidebar\": true\n}\n[/block]\n<div align=\"right\"><a href=\"#top\">top</a></div>\n\n<hr>","updates":[],"order":72,"isReference":false,"hidden":false,"sync_unique":"","link_url":"","link_external":false,"_id":"5774f83fd44a3e0e00329ab1","category":{"sync":{"isSync":false,"url":""},"pages":[],"title":"Cavatica API","slug":"api","order":18,"from_sync":false,"reference":false,"_id":"5773df36904b0c0e00ef05ff","createdAt":"2016-06-29T14:46:14.277Z","version":"5773dcfc255e820e00e1cd50","__v":0,"project":"5773dcfc255e820e00e1cd4d"},"createdAt":"2016-06-30T10:45:19.087Z","user":"575e85ac41c8ba0e00259a44","__v":4,"project":"5773dcfc255e820e00e1cd4d","githubsync":"","parentDoc":null,"version":{"version":"1.0","version_clean":"1.0.0","codename":"","is_stable":true,"is_beta":false,"is_hidden":false,"is_deprecated":false,"categories":["5773dcfc255e820e00e1cd51","5773df36904b0c0e00ef05ff","577baf92451b1e0e006075ac","577bb183b7ee4a0e007c4e8d","577ce77a1cf3cb0e0048e5ea","577d11865fd4de0e00cc3dab","578e62792c3c790e00937597","578f4fd98335ca0e006d5c84","578f5e5c3d04570e00976ebb","57bc35f7531e000e0075d118","57f801b3760f3a1700219ebb","5804d55d1642890f00803623","581c8d55c0dc651900aa9350","589dcf8ba8c63b3b00c3704f","594cebadd8a2f7001b0b53b2","59a562f46a5d8c00238e309a","5a2aa096e25025003c582b58","5a2e79566c771d003ca0acd4","5a3a5166142db90026f24007","5a3a52b5bcc254001c4bf152","5a3a574a2be213002675c6d2","5a3a66bb2be213002675cb73","5a3a6e4854faf60030b63159","5c8a68278e883901341de571","5cb9971e57bf020024523c7b","5cbf1683e2a36d01d5012ecd","5dc15666a4f788004c5fd7d7","5eaff69e844d67003642a020","5eb00899b36ba5002d35b0c1","5eb0172be179b70073dc936e","5eb01b42b36ba5002d35ebba","5eb01f202654a20136813093","5eb918ef149186021c9a76c8","5f0839d3f4b24e005ebbbc29"],"_id":"5773dcfc255e820e00e1cd50","__v":34,"createdAt":"2016-06-29T14:36:44.812Z","releaseDate":"2016-06-29T14:36:44.812Z","project":"5773dcfc255e820e00e1cd4d"}}

getGet task inputs

/tasks/{task_id}/inputs For general information on the API, including formatting, parameters, and pagination, please see the [API Overview](the-api).

This call returns just the inputs provided to the specified task. The task is referred to by its ID, which you can obtain by making the call to [list all tasks you can access](doc:list-tasks-you-can-access). [block:code] { "codes": [ { "code": "https://cavatica-api.sbgenomics.com/v2/tasks/{task_id}/inputs", "language": "text", "name": "API path" } ] } [/block] ##Request ###Example request [block:code] { "codes": [ { "code": "GET /v2/tasks/08c5ce64-1551-4b7d-b054-63a1517bc7bb/inputs HTTP/1.1\nHost: cavatica-api.sbgenomics.com\nX-SBG-Auth-Token: 3259c50e1ac5426ea8f1273259740f74\n", "language": "http", "name": null }, { "code": "curl -s -H \"X-SBG-Auth-Token: 6282d5e2121d43e7900e9d52b15845e7\" -H \"content-type: application/json\" -X GET \"https://cavatica-api.sbgenomics.com/v2/tasks/08c5ce64-1551-4b7d-b054-63a1517bc7bb/inputs\"", "language": "curl", "name": "cURL" } ], "sidebar": true } [/block] ###Header Fields [block:parameters] { "data": { "h-0": "Name", "h-1": "Description", "0-0": "`X-SBG-Auth-Token`\n_required_", "0-1": "Your Cavatica [authentication token](doc:get-your-authentication-token).", "h-2": "" }, "cols": 2, "rows": 1 } [/block] ###Path parameters [block:parameters] { "data": { "0-0": "`task_id`\n_required_", "h-0": "Name", "h-1": "Description", "0-1": "The ID of the task you are querying" }, "cols": 2, "rows": 1 } [/block] ###Query parameters [block:parameters] { "data": { "h-0": "Name", "h-1": "Data type", "h-2": "Description", "0-0": "`fields`", "0-1": "string", "0-2": "Selector specifying a subset of fields to include in the response." }, "cols": 3, "rows": 1 } [/block] ##Response [See a list of Cavatica-specific response codes that may be contained in the body of the response.](doc:api-status-codes) ###Example response body [block:code] { "codes": [ { "code": "{\n \"Known_SNPs\": [\n {\n \"class\": \"File\",\n \"path\": \"566b059ae4b0c560b469eb7c\",\n \"name\": \"dbsnp_137.b37.vcf\"\n }\n ],\n \"Known_Indels\": [\n {\n \"class\": \"File\",\n \"path\": \"566b059ae4b0c560b469eb81\",\n \"name\": \"1000G_phase1.indels.b37.vcf\"\n },\n {\n \"class\": \"File\",\n \"path\": \"566b059ae4b0c560b469eb86\",\n \"name\": \"Mills_and_1000G_gold_standard.indels.b37.sites.vcf\"\n }\n ],\n \"input_file\": {\n \"class\": \"File\",\n \"path\": \"56796c27e4b0c560b46ab03c\",\n \"name\": \"3d1b628fa0d554d5fefb71444511dcbb.bam\"\n },\n \"Target_BED\": {\n \"class\": \"File\",\n \"path\": \"566b059ae4b0c560b469eb7f\",\n \"name\": \"exome_targets.b37.bed\"\n },\n \"Reference\": {\n \"class\": \"File\",\n \"path\": \"56796f07e4b0c560b46ab043\",\n \"name\": \"GRCh37-lite.fa\"\n },\n \"snpEff_databse\": {\n \"class\": \"File\",\n \"path\": \"566b059ae4b0c560b469eb83\",\n \"name\": \"snpEff_v3_3_GRCh37.71.zip\"\n },\n \"memory_per_job\": 8000\n}", "language": "json" } ], "sidebar": true } [/block] <div align="right"><a href="#top">top</a></div> <hr>