Rerun a task

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Use output destinations in API calls:

Create a new draft task

Get details of a task

Modify a task

Run a task

Rerun a task

This call reruns (executes) the specified task. Once rerun, the task can either be in draft mode or immediately ran, using the action query parameter (see below).

Request

https://cavatica-api.sbgenomics.com/v2/tasks/{task_id}/actions/clone

Header fields

Name	Description
`X-SBG-Auth-Token` required	Your CAVATICA authentication token.

Path parameters

Name	Data type	Description
`task_id` required	string	The ID of the task you are rerunning.

Query parameters

Name	Data type	Description
action	string	Set this to `run` in order to create a draft task and execute it immediately.

Response

See a list of CAVATICA-specific response codes that may be contained in the body of the response.

Example response body

{
    "href": "https://cavatica-api.sbgenomics.com/v2/tasks/ea078c48-12c3-5460-a43b-4a1ab89e7f15",
    "id": "ea078c48-12c3-5460-a43b-4a1ab89e7f15",
    "name": "VarsScan2 WF from BAM test",
    "status": "DRAFT",
    "project": "rfranklin/rfranklin-s-demo-project",
    "app": "rfranklin/rfranklin-s-demo-project/varscan2-workflow-from-bam-v2-3-9/0",
    "type": "v2",
    "created_by": "rfranklin",
    "start_time": "2018-07-03T14:24:10Z",
    "batch": false,
    "use_interruptible_instances": false,
    "errors": [],
    "warnings": [],
    "inputs": {
        "input_fasta_file": {
            "path": "56789652f890e8dfeb24ab2b",
            "class": "File"
        },
        "Normal_BAM": {
            "path": "56789652f890e8dfeb24aaf7",
            "class": "File"
        },
        "Tumor_BAM": {
            "path": "56789652f890e8dfeb24aae1",
            "class": "File"
        }
    },
    "outputs": {
        "High_Confidence_INDELs": {},
        "High_Confidence_SNPs": {}
    },
    "created_time": "2018-07-03T14:24:10Z",
    "main_location": "volume://rfranklin/task-outputs/mar_19",
    "main_location_alias": "/outputs/<app_name>/mar_19",
    "nodes_override": true,
    "nodes_location": {
        "High_Confidence_INDELs": {
            "output_location": "/outputs/<app_name>/mar_19/html_reports"
        },
        "High_Confidence_SNPs": {
            "output_location": "volume://rfranklin/task-outputs/mar_19",
            "output_location_alias": "/outputs/<app_name>/mar_19/vcf"
        }
    }
}