We’ve just published four tools from the OncoGEMINI 1.0.0 toolkit:
- OncoGEMINI Bottleneck that identifies somatic variants with increasing allele frequency in longitudinal data.
- OncoGEMINI Loh, a command tool that performs loss of heterozygosity analysis.
- OncoGEMINI Truncal that recovers variants that appear in all tumor samples, but are absent in the normal sample.
- OncoGEMINI Unique tool for identifying somatic variants unique to a subset of samples.