We have just published RTG Tools 3.12.1 (ROCPlot, VCFEval, Format), MaxQuant 188.8.131.52 and GATK GenotypeGVCFs 184.108.40.206 tools:
- RTG Tools Format converts data files from FASTA/FASTQ/SAM/BAM into the RTG Sequence Data File (SDF) format.
- RTG Tools VCFEval is a tool that performs sophisticated comparison of VCF files.
- RTG Tools ROCPlot is used to plot ROC curves from ROC data files generated by RTG Tools VCFEval.
- MaxQuant integrates algorithms specifically developed for high-resolution, quantitative MS data, and it is applicable for shotgun proteomics.
- GATK GenotypeGVCFs is used to joint-genotype GVCF files created by GATK HaplotypeCaller/GATK GenomicsDBImport tools.