---
agentTools:
  projectIndex: https://docs.cavatica.org/llms.txt
---

# Release note 06.01.23

## Recently published apps

We published the following apps in our Public Apps gallery:

* **Parabricks fq2bam** (4.0.0-1) - GPU-accelerated alignment, duplicate marking and optionally BQSR.
* **Parabricks haplotypecaller** (4.0.0-1) - GPU-accelerated **GATK HaplotypeCaller**.
* **Parabricks deepvariant** (4.0.0-1) - GPU-accelerated version of **DeepVariant**.
* **Parabricks Somatic Calling** workflow - calling somatic variants from a matched tumor-normal sample pair. It is based on running accelerated **Mutect2** on GPU instances with or without a panel of normals.