We published the following apps in our Public Apps gallery:
- Parabricks fq2bam (4.0.0-1) - GPU-accelerated alignment, duplicate marking and optionally BQSR.
- Parabricks haplotypecaller (4.0.0-1) - GPU-accelerated GATK HaplotypeCaller.
- Parabricks deepvariant (4.0.0-1) - GPU-accelerated version of DeepVariant.
- Parabricks Somatic Calling workflow - calling somatic variants from a matched tumor-normal sample pair. It is based on running accelerated Mutect2 on GPU instances with or without a panel of normals.