Release note 04.01.24
about 1 month ago by Marko Marinkovic
Recently published apps
We published MSIsensor-pro v0.1.2 in our Public Apps gallery:
- MSIsensor-pro v0.1.2 toolkit (an updated version of MSIsensor):
- MSIsensor-pro scan - a tool for cataloging homopolymers and miscrosatelites sites in the reference genome. It prepares reference for MSIsensor-pro msi.
- MSIsensor-pro msi - a tool for somatic microsatellite changes detecting and scoring. Designed to work with paired tumor-normal data.
- MSIsensor-pro baseline - a preprocessing tool for microsatellite instability (MSI) detection using only tumor sequencing data.
- MSIsensor-pro pro - a tool for evaluating microsatellite instability (MSI) using tumor only data
We also published the following ASCAT 3.1.2 tools:
- ASCAT prepareTargetedSeq prepares SNP references for ASCAT processing of targeted sequencing data.
- ASCAT prepareHTS prepares sequencing data (WGS, WES or targeted) for ASCAT. ASCAT infers tumor ploidy, purity and allele-specific copy number profiles.
Recently updated apps
We updated the following apps from the MSIsensor v0.6 toolkit:
- MSIsensor scan - a tool for cataloging homopolymers and miscrosatelites sites in the reference genome. It prepares reference for MSIsensor msi.
- MSIsensor msi - a tool for somatic microsatellite changes detecting and scoring. Designed to work with paired tumor-normal data.