Release note 03.27.23

Recently published apps

We have just published the following GATK tools:

  • GATK IndexFeatureFile - used for indexing of provided feature files.
  • GATK MergeVcfs - used for combining multiple variant files.
  • GATK VariantEval BETA - used for evaluating variant calls.
  • GATK FilterMutectCalls - used to filter somatic SNVs and indels called by Mutect2.

We have also published Minimac 4 4.1.2, which is a tool for imputing genotypes.