We have just published the following GATK 18.104.22.168 tools:
- GATK IndexFeatureFile - used for indexing of provided feature files.
- GATK MergeVcfs - used for combining multiple variant files.
- GATK VariantEval BETA - used for evaluating variant calls.
- GATK FilterMutectCalls - used to filter somatic SNVs and indels called by Mutect2.
We have also published Minimac 4 4.1.2, which is a tool for imputing genotypes.