We have just published two Bowtie2 2.4.5 (CWL 1.2) tools:
- Bowtie2 Indexer, for building a Bowtie index from a set of DNA sequences.
- Bowtie2 Aligner, for performing end-to-end read alignment.
On top of that, there are two more additions to our Public Apps gallery:
- RSeQC - Junction Saturation 5.0.1 (CWL 1.2) tool for determining if the sequencing depth is sufficient to perform alternative splicing.
- GATK IndexFeature 22.214.171.124 tool.