{"title":"Release note 04.19.21","slug":"release-note-041921","body":"## Recently published apps\n \nThe following apps were published in CWL1.x:\n* **Single Cell Multi Sample Pairwise Differential Expression Workflow** - pipeline that performs differential expression analysis on single cell data between pairs of user defined conditions.\n* **Minimap2 v2.17** - a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database, tailored for use with long read sequencing technologies.\n* **fastqValidator 0.1.1** - checks format correctness of paired-end and single-end FASTQ files.\n* **FastP 0.20.1** - ultra-fast FASTQ preprocessor with useful quality control and data-filtering features, including adapter trimming, quality filtering, per-read quality pruning and many other operations with a single scan of FASTQ data.\n* **SBG convert SRA/BAM to FASTQ** - an all-in-one tool that converts SRA/SAM/BAM/CRAM files into FASTQ format.\n* **SBG Create Expression Matrix** - creates aggregated matrices from various types of inputs, most typically from abundance estimates produced by tools like RSEM, Salmon, or Kallisto.\n* **SHAPEIT 4.2.1** - phasing tool for sequencing and SNP array data.\n* **Regenie 2.0.1** - tool for whole genome regression analysis.\n* **UMI-tools 1.1.1** - tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes.","_id":"607d93ac39ea26025916e13f","changelog":[],"createdAt":"2021-04-19T14:29:00.242Z","user":{"name":"Marko Marinkovic","username":"","_id":"5767bc73bb15f40e00a28777"},"initVersion":{"version":"1.0","_id":"5773dcfc255e820e00e1cd50"},"project":"5773dcfc255e820e00e1cd4d","__v":0}

Release note 04.19.21


## Recently published apps The following apps were published in CWL1.x: * **Single Cell Multi Sample Pairwise Differential Expression Workflow** - pipeline that performs differential expression analysis on single cell data between pairs of user defined conditions. * **Minimap2 v2.17** - a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database, tailored for use with long read sequencing technologies. * **fastqValidator 0.1.1** - checks format correctness of paired-end and single-end FASTQ files. * **FastP 0.20.1** - ultra-fast FASTQ preprocessor with useful quality control and data-filtering features, including adapter trimming, quality filtering, per-read quality pruning and many other operations with a single scan of FASTQ data. * **SBG convert SRA/BAM to FASTQ** - an all-in-one tool that converts SRA/SAM/BAM/CRAM files into FASTQ format. * **SBG Create Expression Matrix** - creates aggregated matrices from various types of inputs, most typically from abundance estimates produced by tools like RSEM, Salmon, or Kallisto. * **SHAPEIT 4.2.1** - phasing tool for sequencing and SNP array data. * **Regenie 2.0.1** - tool for whole genome regression analysis. * **UMI-tools 1.1.1** - tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes.