{"title":"Release note 03.08.21","slug":"release-note-030821","body":"## Recently published apps\n\n* **GATK Somatic SNVs and INDELs (Mutect2) 4.1.9.0** can be used to detect SNVs and INDELs in one or more tumor samples from a single individual, with or without a matched normal sample. Assembly implies whole haplotypes and read pairs, rather than single bases, as the atomic units of biological variation and sequencing evidence, improving variant calling.\n* **GATK Somatic Create Mutect2 Panel of Normals 4.1.9.0** workflow creates a panel of normals (germline and artifactual sites) for use in other GATK workflows. It takes multiple normal sample callsets produced by GATK Somatic SNVs and INDELs 4.1.9.0 (Mutect2 workflow) tumor-only mode (although it is called tumor-only, normal samples are given as the input) and collates sites present in two or more samples into a sites-only VCF.\n\nBoth workflows are composed in reference to the official GATK’s WDLs.","_id":"6046286a2727300080d2c6bc","changelog":[],"createdAt":"2021-03-08T13:36:42.162Z","user":{"name":"Marko Marinkovic","username":"","_id":"5767bc73bb15f40e00a28777"},"initVersion":{"version":"1.0","_id":"5773dcfc255e820e00e1cd50"},"project":"5773dcfc255e820e00e1cd4d","__v":0}

Release note 03.08.21


## Recently published apps * **GATK Somatic SNVs and INDELs (Mutect2) 4.1.9.0** can be used to detect SNVs and INDELs in one or more tumor samples from a single individual, with or without a matched normal sample. Assembly implies whole haplotypes and read pairs, rather than single bases, as the atomic units of biological variation and sequencing evidence, improving variant calling. * **GATK Somatic Create Mutect2 Panel of Normals 4.1.9.0** workflow creates a panel of normals (germline and artifactual sites) for use in other GATK workflows. It takes multiple normal sample callsets produced by GATK Somatic SNVs and INDELs 4.1.9.0 (Mutect2 workflow) tumor-only mode (although it is called tumor-only, normal samples are given as the input) and collates sites present in two or more samples into a sites-only VCF. Both workflows are composed in reference to the official GATK’s WDLs.